【发布时间】:2015-12-10 13:11:08
【问题描述】:
我对 Python 很陌生,对并行处理完全陌生。
我一直在编写代码来分析点状图像数据(想想PALM lite)并尝试使用multiprocessing 模块加速我的分析代码。
对于小型数据集,我发现多达四个核心的加速效果相当不错。对于大型数据集,我开始收到 AssertionError。我试图制作一个产生相同错误的简化示例,见下文:
import numpy as np
import multiprocessing as mp
import os
class TestClass(object):
def __init__(self, data):
super().__init__()
self.data = data
def top_level_function(self, nproc = 1):
if nproc > os.cpu_count():
nproc = os.cpu_count()
if nproc == 1:
sums = [self._sub_function() for i in range(10)]
elif 1 < nproc:
print('multiprocessing engaged with {} cores'.format(nproc))
with mp.Pool(nproc) as p:
sums = [p.apply_async(self._sub_function) for i in range(10)]
sums = [pp.get() for pp in sums]
self.sums = sums
return sums
def _sub_function(self):
return self.data.sum(0)
if __name__ == "__main__":
t = TestClass(np.zeros((126,512,512)))
ans = t.top_level_function()
print(len(ans))
ans = t.top_level_function(4)
print(len(ans))
t = TestClass(np.zeros((126,2048,2048)))
ans = t.top_level_function()
print(len(ans))
ans = t.top_level_function(4)
print(len(ans))
哪个输出:
10
multiprocessing engaged with 4 cores
10
10
multiprocessing engaged with 4 cores
Process SpawnPoolWorker-6:
Traceback (most recent call last):
File "C:\Anaconda3\lib\multiprocessing\process.py", line 254, in _bootstrap
self.run()
File "C:\Anaconda3\lib\multiprocessing\process.py", line 93, in run
self._target(*self._args, **self._kwargs)
File "C:\Anaconda3\lib\multiprocessing\pool.py", line 108, in worker
task = get()
File "C:\Anaconda3\lib\multiprocessing\queues.py", line 355, in get
res = self._reader.recv_bytes()
File "C:\Anaconda3\lib\multiprocessing\connection.py", line 216, in recv_bytes
buf = self._recv_bytes(maxlength)
File "C:\Anaconda3\lib\multiprocessing\connection.py", line 318, in _recv_bytes
return self._get_more_data(ov, maxsize)
File "C:\Anaconda3\lib\multiprocessing\connection.py", line 337, in _get_more_data
assert left > 0
AssertionError
Process SpawnPoolWorker-8:
Traceback (most recent call last):
File "C:\Anaconda3\lib\multiprocessing\process.py", line 254, in _bootstrap
self.run()
File "C:\Anaconda3\lib\multiprocessing\process.py", line 93, in run
self._target(*self._args, **self._kwargs)
File "C:\Anaconda3\lib\multiprocessing\pool.py", line 108, in worker
task = get()
File "C:\Anaconda3\lib\multiprocessing\queues.py", line 355, in get
res = self._reader.recv_bytes()
File "C:\Anaconda3\lib\multiprocessing\connection.py", line 216, in recv_bytes
buf = self._recv_bytes(maxlength)
File "C:\Anaconda3\lib\multiprocessing\connection.py", line 318, in _recv_bytes
return self._get_more_data(ov, maxsize)
File "C:\Anaconda3\lib\multiprocessing\connection.py", line 337, in _get_more_data
assert left > 0
AssertionError
Traceback (most recent call last):
File "test.py", line 41, in <module>
ans = t.top_level_function(4)
File "test.py", line 21, in top_level_function
sums = [pp.get() for pp in sums]
File "test.py", line 21, in <listcomp>
sums = [pp.get() for pp in sums]
File "C:\Anaconda3\lib\multiprocessing\pool.py", line 599, in get
raise self._value
File "C:\Anaconda3\lib\multiprocessing\pool.py", line 383, in _handle_tasks
put(task)
File "C:\Anaconda3\lib\multiprocessing\connection.py", line 206, in send
self._send_bytes(ForkingPickler.dumps(obj))
File "C:\Anaconda3\lib\multiprocessing\connection.py", line 280, in _send_bytes
ov, err = _winapi.WriteFile(self._handle, buf, overlapped=True)
OSError: [WinError 87] The parameter is incorrect
所以第一个示例运行良好,但后面的示例(更大的数据集)崩溃了。
我不知道这个错误来自哪里以及如何解决它。任何帮助将不胜感激。
【问题讨论】:
-
确认一下,第一个 (
t = TestClass(np.zeros((126,512,512)))) 没有错误,而第二个 (t = TestClass(np.zeros((126,2048,2048)))) 导致您描述的错误? -
正如 mata 解释的那样,您可能在进程之间发送了太多数据。每个进程可能应该自己加载数据,进行尽可能多的处理并返回某种小尺寸的结果。基本上最小化进程之间发送的数据量。如果你能解释更多关于数据输入、中间体、函数和输出的信息,那么有人可能会提出更好的安排。
标签: python parallel-processing multiprocessing