【发布时间】：2019-01-10 16:59:43
【问题描述】：
我正在尝试安装 Rfast 软件包。它给了我以下错误，
/usr/lib/R/etc/Makeconf:168: recipe for target 'Norm.o' failed
make: *** [Norm.o] Error 1
完整的错误信息是这样的，
> install.packages("Rfast", dependencies = TRUE)
* installing *source* package 'Rfast' ...
** package 'Rfast' successfully unpacked and MD5 sums checked
** libs
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I"/home/haseeb/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/haseeb/R/x86_64-pc-linux-gnu-library/3.4/RcppArmadillo/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Diag.cpp -o Diag.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I"/home/haseeb/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/haseeb/R/x86_64-pc-linux-gnu-library/3.4/RcppArmadillo/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Norm.cpp -o Norm.o
In file included from Norm.cpp:4:0:
templates.h: In function 'SEXPREC* eachrow_helper(SEXP, SEXP)':
templates.h:904:15: error: there are no arguments to 'DATAPTR' that depend on a template parameter, so a declaration of 'DATAPTR' must be available [-fpermissive]
T *xx=(T *) DATAPTR(x),*xend=xx+ncol*nrow,*yy=(T *) DATAPTR(y),yvalue,*x3;
^~~~~~~
templates.h:904:15: note: (if you use '-fpermissive', G++ will accept your code, but allowing the use of an undeclared name is deprecated)
templates.h:904:55: error: there are no arguments to 'DATAPTR' that depend on a template parameter, so a declaration of 'DATAPTR' must be available [-fpermissive]
T *xx=(T *) DATAPTR(x),*xend=xx+ncol*nrow,*yy=(T *) DATAPTR(y),yvalue,*x3;
^~~~~~~
templates.h:905:32: error: there are no arguments to 'DATAPTR' that depend on a template parameter, so a declaration of 'DATAPTR' must be available [-fpermissive]
RETURN_TYPE *m=(RETURN_TYPE*)DATAPTR(mat);
^~~~~~~
/usr/lib/R/etc/Makeconf:168: recipe for target 'Norm.o' failed
make: *** [Norm.o] Error 1
ERROR: compilation failed for package 'Rfast'
我的sessioninfo如下，
> sessionInfo()
R version 3.4.4 (2018-03-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.1 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.7.1
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.7.1
locale:
[1] LC_CTYPE=C LC_NUMERIC=C LC_TIME=de_DE.UTF-8
[4] LC_COLLATE=C LC_MONETARY=de_DE.UTF-8 LC_MESSAGES=C
[7] LC_PAPER=de_DE.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_3.4.4 tools_3.4.4 yaml_2.2.0
有人可以帮我解决这个问题吗？
【问题讨论】：
-
能否显示错误前后的两三行？您引用的内容不提供信息。 Rfast 应该干净地安装在这个平台上。
-
请将其中的（合理的）部分编辑到问题中。请参阅creating a mcve 的帮助。
-
那是……一个奇怪的。不确定。通过at CRAN as well.
-
其他 Linux 机器上也没有。我经常安装 Rfast，因为它是 Rcpp 的反向依赖，所以我也检查一下。这个问题很可能是你的 Linux 计算机的本地问题——在编译器或其他东西之间混合。所以有理由偶然发现
DATAPTR这是一个 C 宏。你确实可以通过builder.r-hub.io访问其他Linux机器。