ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. 基因组变异数据的功能注释,人重必用

KEGG:a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies.

EggNOG:(evolutionary genealogy of genes: Non-supervised Orthologous Groups), a public resource that provides Orthologous Groups (OGs) of proteins at different taxonomic levels, each with integrated and summarized functional annotations.(分析蛋白的直系同源组,同时作功能注释,在肠道微生物分析时会用到)

Meta&16S 

greengenes:a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB

Silva:A comprehensive on-line resource for quality checked and aligned ribosomal RNA sequence data.

HPMCD:the database of human microbial communities from metagenomic datasets and microbial reference genomes (Paper) 人类泛微生物群体

 

GeneCards:人类基因的综合数据库,提供简明的基因组,蛋白质组,转录,遗传和功能上所有已知和预测的人类基因。GeneCards中的信息功能信息包括指向疾病的关系,突变和多态性,基因表达,基因功能,途径,蛋白质与蛋白质相互作用,相关的药物及化合物和切割等先进的研究抗体的试剂和工具等,重组蛋白,克隆,表达分析和RNAi试剂等。 (各种ID相互转换)

 

持续整理~

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