augustus 3.3.2 的安装问题

Question

mkdir -p bin cd src && make make[1]: 进入目录 /home/dcb/Documents/sof/augustus-3.3.2/src' echo "-Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 " > cxxflags make[1]: Leaving directory /home/dcb/Documents/sof/augustus-3.3.2/src' cd auxprogs && make make[1]: 进入目录 /home/dcb/Documents/sof/augustus-3.3.2/auxprogs' cd bam2hints; make; make[2]: Entering directory /home/dcb/Documents/sof/augustus-3.3.2/auxprogs/bam2hints' g++ -Wall -O2 -o bam2hints bam2hints.o -lbamtools -lz /usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crti .o: .init' /usr/bin/ld: final link failed: Bad value collect2: error: ld returned 1 exit status make[2]: *** [bam2hints] Error 1 make[2]: Leaving directory /home/dcb/Documents/sof/augustus-3.3.2/auxprogs/bam2hints' make[1] 部分中无法识别的重定位 (0x2a)： * [all] 错误 2 make[1]: 离开目录 `/home/dcb/Documents/sof/augustus-3.3.2/auxprogs' make: * [all] 错误 2

Answer 1

通过 Conda 安装可能会有所帮助

• 下载 miniconda

wget https://repo.anaconda.com/miniconda/Miniconda2-latest-Linux-x86_64.sh
bash Miniconda2-latest-Linux-x86_64.sh

• 安装augustus

conda install -c bioconda augustus