【发布时间】:2021-10-03 05:46:36
【问题描述】:
我想在dataset_csv 函数中调用df["ID"],然后使用dataset = RawToCSV.dataset_csv(input_path) 调用dataset_csv 函数。 df["ID"] 是在 raw_file_processing 函数中定义的。
我的代码引发了TypeError: __init__() missing 1 required positional argument: 'df' 错误。
import re
import pandas as pd
import os
import numpy as np
input_path = "../input_data"
class RawToCSV:
def __init__(self, path_, df):
self.measurement_df = None
self.cls = None
self.path_ = path_
self.df = df
def raw_file_processing(self, path_):
# Open all the subfolders within path
for root, dirs, files in os.walk(path_):
for file in files:
with open(os.path.join(root, file), "r") as data:
self.df = pd.read_csv(data)
# 'Class' refers to the independent variable
cls_info = self.df.iloc[2]
# Dummy-code the classes
cls = pd.get_dummies(cls_info)
# Create the ID series by concatenating columns 1-3
self.df = self.df.assign(
ID=self.df[['cell_id:cell_id', 'region:region', 'tile_num:tile_num']].apply(
lambda row: '_'.join([str(each) for each in row]), axis=1))
self.df = self.df.drop(columns=['cell_id:cell_id', 'region:region', 'tile_num:tile_num'])
# Obtain measurement info
# Normalize data against blank/empty columns
# log-transform the data
for col in self.df[9:]:
if re.findall(r"Blank|Empty", col):
background = col
else:
line = col.readline()
for dat in line:
norm_data = dat / background
self.measurement_df = np.log2(norm_data)
return self.df["ID"], cls, self.measurement_df
def dataset_csv(self):
"""Col 1: ID
Col 2: class
Col 3-n: measurements"""
ids = self.df["ID"]
id_col = ids.to_frame()
cls_col = self.cls.to_frame()
frames = [id_col, cls_col, self.measurement_df]
dataset_df = pd.concat(frames)
data_csv = dataset_df.to_csv("../input_data/dataset.csv")
return data_csv
raw = RawToCSV(input_path)
three_tuple = raw.raw_file_processing(input_path)
dataset = raw.data_csv()
追溯:
> --------------------------------------------------------------------------- TypeError Traceback (most recent call
> last) /tmp/ipykernel_136/323215226.py in <module>
> ----> 1 raw = RawToCSV(input_path)
> 2 three_tuple = raw.raw_file_processing(input_path)
>
> TypeError: __init__() missing 1 required positional argument: 'df'
【问题讨论】:
-
你能解释一下
self.df = self.df这行吗? -
亲爱的梅洛洛,我已经回答了你的问题。
标签: python pandas function class