Spring Data JPA 中的 JDBC CommunicationsException

Question

我有一个使用 Data JPA / Hibernate / JDBC 和 MySQL 的 Spring Boot 应用程序，默认超时时间为 8 小时。当一夜之间运行时，它会崩溃并出现以下异常：

javax.persistence.PersistenceException: org.hibernate.exception.JDBCConnectionException: could not prepare statement
at org.hibernate.jpa.spi.AbstractEntityManagerImpl.convert(AbstractEntityManagerImpl.java:1763)
at org.hibernate.jpa.spi.AbstractEntityManagerImpl.convert(AbstractEntityManagerImpl.java:1677)
at org.hibernate.jpa.internal.QueryImpl.getResultList(QueryImpl.java:458)
at repository.NativeQuery.findMostRecentRegistrations(NativeQuery.java:110)
at admin.AdminController.adminDashboard(AdminController.java:126)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:222)
at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:137)
at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:110)
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:814)
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:737)
at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:85)
at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:959)
at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:893)
at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:969)
at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:860)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:622)
at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:845)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:729)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:291)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.springframework.boot.actuate.autoconfigure.EndpointWebMvcAutoConfiguration$ApplicationContextHeaderFilter.doFilterInternal(EndpointWebMvcAutoConfiguration.java:237)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.springframework.boot.actuate.trace.WebRequestTraceFilter.doFilterInternal(WebRequestTraceFilter.java:111)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:316)
at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:126)
at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:90)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:114)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:122)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.authentication.AnonymousAuthenticationFilter.doFilter(AnonymousAuthenticationFilter.java:111)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.authentication.rememberme.RememberMeAuthenticationFilter.doFilter(RememberMeAuthenticationFilter.java:157)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:169)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:48)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.authentication.AbstractAuthenticationProcessingFilter.doFilter(AbstractAuthenticationProcessingFilter.java:205)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:120)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.csrf.CsrfFilter.doFilterInternal(CsrfFilter.java:96)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.header.HeaderWriterFilter.doFilterInternal(HeaderWriterFilter.java:64)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:91)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter.doFilterInternal(WebAsyncManagerIntegrationFilter.java:53)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:213)
at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:176)
at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:346)
at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:262)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.springframework.web.filter.RequestContextFilter.doFilterInternal(RequestContextFilter.java:99)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.springframework.web.filter.HttpPutFormContentFilter.doFilterInternal(HttpPutFormContentFilter.java:87)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.springframework.web.filter.HiddenHttpMethodFilter.doFilterInternal(HiddenHttpMethodFilter.java:77)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:121)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.springframework.boot.actuate.autoconfigure.MetricsFilter.doFilterInternal(MetricsFilter.java:103)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.springframework.boot.context.web.ErrorPageFilter.doFilter(ErrorPageFilter.java:120)
at org.springframework.boot.context.web.ErrorPageFilter.access$000(ErrorPageFilter.java:61)
at org.springframework.boot.context.web.ErrorPageFilter$1.doFilterInternal(ErrorPageFilter.java:95)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.springframework.boot.context.web.ErrorPageFilter.doFilter(ErrorPageFilter.java:113)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:217)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:106)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:614)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:142)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:79)
at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:616)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:88)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:518)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1091)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:673)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1500)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:1456)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)
Caused by: org.hibernate.exception.JDBCConnectionException: could not prepare statement
at org.hibernate.exception.internal.SQLExceptionTypeDelegate.convert(SQLExceptionTypeDelegate.java:65)
at org.hibernate.exception.internal.StandardSQLExceptionConverter.convert(StandardSQLExceptionConverter.java:49)
at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:126)
at org.hibernate.engine.jdbc.internal.StatementPreparerImpl$StatementPreparationTemplate.prepareStatement(StatementPreparerImpl.java:196)
at org.hibernate.engine.jdbc.internal.StatementPreparerImpl.prepareQueryStatement(StatementPreparerImpl.java:160)
at org.hibernate.loader.Loader.prepareQueryStatement(Loader.java:1885)
at org.hibernate.loader.Loader.executeQueryStatement(Loader.java:1862)
at org.hibernate.loader.Loader.executeQueryStatement(Loader.java:1839)
at org.hibernate.loader.Loader.doQuery(Loader.java:910)
at org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:355)
at org.hibernate.loader.Loader.doList(Loader.java:2554)
at org.hibernate.loader.Loader.doList(Loader.java:2540)
at org.hibernate.loader.Loader.listIgnoreQueryCache(Loader.java:2370)
at org.hibernate.loader.Loader.list(Loader.java:2365)
at org.hibernate.loader.custom.CustomLoader.list(CustomLoader.java:353)
at org.hibernate.internal.SessionImpl.listCustomQuery(SessionImpl.java:1909)
at org.hibernate.internal.AbstractSessionImpl.list(AbstractSessionImpl.java:311)
at org.hibernate.internal.SQLQueryImpl.list(SQLQueryImpl.java:141)
at org.hibernate.jpa.internal.QueryImpl.list(QueryImpl.java:573)
at org.hibernate.jpa.internal.QueryImpl.getResultList(QueryImpl.java:449)
... 112 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLNonTransientConnectionException: No operations allowed after connection closed.
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:422)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:404)
at com.mysql.jdbc.Util.getInstance(Util.java:387)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:917)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:896)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:885)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:860)
at com.mysql.jdbc.ConnectionImpl.throwConnectionClosedException(ConnectionImpl.java:1235)
at com.mysql.jdbc.ConnectionImpl.checkClosed(ConnectionImpl.java:1230)
at com.mysql.jdbc.ConnectionImpl.prepareStatement(ConnectionImpl.java:4132)
at com.mysql.jdbc.ConnectionImpl.prepareStatement(ConnectionImpl.java:4101)
at sun.reflect.GeneratedMethodAccessor146.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.apache.tomcat.jdbc.pool.ProxyConnection.invoke(ProxyConnection.java:126)
at org.apache.tomcat.jdbc.pool.JdbcInterceptor.invoke(JdbcInterceptor.java:108)
at org.apache.tomcat.jdbc.pool.DisposableConnectionFacade.invoke(DisposableConnectionFacade.java:81)
at com.sun.proxy.$Proxy78.prepareStatement(Unknown Source)
at org.hibernate.engine.jdbc.internal.StatementPreparerImpl$5.doPrepare(StatementPreparerImpl.java:162)
at org.hibernate.engine.jdbc.internal.StatementPreparerImpl$StatementPreparationTemplate.prepareStatement(StatementPreparerImpl.java:186)
... 128 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: The last packet successfully received from the server was 39,274,020 milliseconds ago.  The last packet sent successfully to the server was 39,274,020 milliseconds ago. is longer than the server configured value of 'wait_timeout'. You should consider either expiring and/or testing connection validity before use in your application, increasing the server configured values for client timeouts, or using the Connector/J connection property 'autoReconnect=true' to avoid this problem.
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:422)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:404)
at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:981)
at com.mysql.jdbc.MysqlIO.send(MysqlIO.java:3652)
at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2460)
at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2625)
at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2551)
at com.mysql.jdbc.PreparedStatement.executeInternal(PreparedStatement.java:1861)
at com.mysql.jdbc.PreparedStatement.executeQuery(PreparedStatement.java:1962)
at org.hibernate.engine.jdbc.internal.ResultSetReturnImpl.extract(ResultSetReturnImpl.java:82)
at org.hibernate.loader.Loader.getResultSet(Loader.java:2066)
at org.hibernate.loader.Loader.executeQueryStatement(Loader.java:1863)
... 125 more
Caused by: java.net.SocketException: Broken pipe
at java.net.SocketOutputStream.socketWrite0(Native Method)
at java.net.SocketOutputStream.socketWrite(SocketOutputStream.java:109)
at java.net.SocketOutputStream.write(SocketOutputStream.java:153)
at java.io.BufferedOutputStream.flushBuffer(BufferedOutputStream.java:82)
at java.io.BufferedOutputStream.flush(BufferedOutputStream.java:140)
at com.mysql.jdbc.MysqlIO.send(MysqlIO.java:3634)
... 133 more

根据Spring Boot JPA - configuring auto reconnect 和其他帖子的建议，我在application.properties 中有以下设置，应该可以保持连接：

spring.datasource.url: jdbc:mysql://localhost:3306/<database-name>
spring.datasource.username=<username>
spring.datasource.password=<password>
spring.datasource.driverClassName=com.mysql.jdbc.Driver
#
spring.datasource.testWhileIdle=true
spring.datasource.timeBetweenEvictionRunsMillis=3600000
spring.datasource.validationQuery=SELECT 1
spring.datasource.testOnBorrow=true
#
spring.jpa.properties.hibernate.dialect = org.hibernate.dialect.MySQL5Dialect

我唯一的线索是崩溃发生在本机查询上（参见上面堆栈跟踪中的第 4 行），而在应用程序运行一夜之后，其他数据库访问似乎仍然可以正常工作。 （查询本身工作得很好，所以为了简洁起见，我不在这里发布它。）这往往表明在运行本机查询之后，与执行它的数据库的连接被保留但不保持活动状态。是否有保持这种连接的设置？

---

更新：

我将以下方法添加到我的NativeQuery 类（所有本机查询方法所在的位置）：

@Component
public class NativeQuery {
    ...
    private static final long KEEP_ALIVE_MILLIS = 60 * 60 * 1000;

    @Scheduled(initialDelay = KEEP_ALIVE_MILLIS, fixedRate = KEEP_ALIVE_MILLIS)
    private void connectionKeepAlive() {
        boolean success = true;
        String msg = "Database connection keep-alive ";
        try {
            Query query = entityManager.createNativeQuery("SELECT 1");
            BigInteger result = (BigInteger)query.getSingleResult();
            if (result != null && result.equals(BigInteger.ONE)) {
                msg += "succeeded";
            }
            else {
                msg += "failed with result " + (result != null ? result.toString() : "N/A");
                success = false;
            }
        }
        catch (Exception e) {
            msg += "crashed with exception: " + e.toString();
            success = false;
        }

        if (success) {
            if (log.isInfoEnabled())
                log.info(msg);
        }
        else {
            if (log.isErrorEnabled())
                log.error(msg);
        }
    }
    ...
}

此代码每小时执行一次保持活动查询。我让它在一夜之间运行，当我重新登录并执行本机查询时，不再报告上述异常。所以，这个修复似乎有效。

但是，这也意味着所有本机查询共享相同的连接。如果根据 Spring Boot 的一般实例化规则，需要同时执行多个查询并且 NativeQuery 类只有一个实例，会发生什么情况？

旁注：注意query.getSingleResult() 如何返回BigInteger。从技术上讲，SELECT 1 返回 MySQL BIGINT，这是一个 64 位整数，因此 Java long 就足够了。在 Hibernate 内部，有人简单地将BIGINT 翻译成BigInteger，尽管数据库方言明确设置为MySQL5。

Answer 1

我建议您将此配置添加到您的应用程序中。属性添加重新测试：

spring.datasource.validationQuery=SELECT 1
spring.datasource.testOnBorrow=true

Answer 2

您正在使用 tomcat 连接池。您也许可以尝试使用更强大的连接池，例如HikariCP