【问题标题】:Cannot install netCDF4 python package on OS X无法在 OS X 上安装 netCDF4 python 包
【发布时间】:2013-08-09 01:27:08
【问题描述】:

我正在尝试使用pip install netCDF4 在 OS X 上安装 netCDF4,但出现以下错误:

------------------------------------------------------------
/usr/local/bin/pip run on Wed Aug  7 23:02:37 2013
Downloading/unpacking netCDF4

  Running setup.py egg_info for package netCDF4



    HDF5_DIR environment variable not set, checking some standard locations ..

    checking /Users/mc ...

    checking /usr/local ...

    checking /sw ...

    checking /opt ...

    checking /opt/local ...

    checking /usr ...

    Traceback (most recent call last):

      File "<string>", line 16, in <module>

      File "/var/folders/jj/0w0dd3n16jq4g5579g6c7h040000gn/T/pip-build/netCDF4/setup.py", line 114, in <module>

        raise ValueError('did not find HDF5 headers')

    ValueError: did not find HDF5 headers

    Complete output from command python setup.py egg_info:



HDF5_DIR environment variable not set, checking some standard locations ..

checking /Users/mc ...

checking /usr/local ...

checking /sw ...

checking /opt ...

checking /opt/local ...

checking /usr ...

Traceback (most recent call last):

  File "<string>", line 16, in <module>

  File "/var/folders/jj/0w0dd3n16jq4g5579g6c7h040000gn/T/pip-build/netCDF4/setup.py", line 114, in <module>

    raise ValueError('did not find HDF5 headers')

ValueError: did not find HDF5 headers

----------------------------------------

Command python setup.py egg_info failed with error code 1 in /var/folders/jj/0w0dd3n16jq4g5579g6c7h040000gn/T/pip-build/netCDF4

Exception information:
Traceback (most recent call last):
  File "/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pip-1.2.1-py2.7.egg/pip/basecommand.py", line 107, in main
    status = self.run(options, args)
  File "/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pip-1.2.1-py2.7.egg/pip/commands/install.py", line 256, in run
    requirement_set.prepare_files(finder, force_root_egg_info=self.bundle, bundle=self.bundle)
  File "/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pip-1.2.1-py2.7.egg/pip/req.py", line 1042, in prepare_files
    req_to_install.run_egg_info()
  File "/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pip-1.2.1-py2.7.egg/pip/req.py", line 236, in run_egg_info
    command_desc='python setup.py egg_info')
  File "/usr/local/Cellar/python/2.7.3/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pip-1.2.1-py2.7.egg/pip/util.py", line 612, in call_subprocess
    % (command_desc, proc.returncode, cwd))
InstallationError: Command python setup.py egg_info failed with error code 1 in /var/folders/jj/0w0dd3n16jq4g5579g6c7h040000gn/T/pip-build/netCDF4

我已经将HDF5 安装到/usr/local/hdf5/,但我仍然遇到同样的错误。我是 Python 新手,因此我们将不胜感激。

谢谢。

【问题讨论】:

  • 我一直在使用these instruction在 OS X 上安装 netcdf4-python。您可能只需要进行第 6 步。虚拟环境非常好。

标签: python pip netcdf


【解决方案1】:

您可能需要将 HDF5_DIR 环境变量设置为安装 HDF5 的位置;它正在查看标准安装路径,但没有找到 HDF5 的标头 - 因此至少有一个错误。

您可以在调用 pip 之前简单地设置它:

HDF5_DIR=/usr/local/hdf5 pip install netCDF4

或者导出它然后调用 pip:

export HDF5_DIR=/usr/local/hdf5
pip install netCDF4

【讨论】:

  • 标准安装路径之一是/usr/local - 但那是我的 HDF5 的安装位置。
  • 也许您需要将 HDF5_DIR 设置为“/usr/local/hdf5/” - 安装 hdf5 的位置(正如您在问题中指出的那样。)
  • @mchangun 看到这个链接:stackoverflow.com/questions/4972079/…
【解决方案2】:

只需尝试此过程即可安装 netCDF4

  1. link安装HDF5

  2. link安装netcdf4

  3. link安装netcdf4-python

详情请访问link

【讨论】:

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