R自定义包安装从文件错误

Question

我一直在为一个模拟项目开发一个 R 包，我在家里的电脑上使用 RStudio 成功构建和安装了它。但是在大学的另一台机器上我遇到了麻烦......如果我尝试在 RStudio 中构建一个二进制文件，它也会安装它，我会收到一个错误，如果我只是编译一个源代码来获得一个 .tar.gz 它可以工作，但是当我来安装时，我再次收到错误。两次出现错误的读数如下。我认为它与库有关，但是为什么这与我不知道的家用计算机不同，我不是程序员，并且在这台机器上安装 R 和 RTools 和 RStudio 的方式与我个人的完全相同机器。 - 我有几天的管理员权限。

install.packages("speEaR_1.0.tar.gz", repos=NULL, type="source")
Installing package(s) into ‘\\ueahome5/ressci17/yrq12edu/data/Documents/R/win-library/2.15’
(as ‘lib’ is unspecified)
* installing *source* package 'speEaR' ...
** R
** preparing package for lazy loading
** help
Warning: C:/Users/yrq12edu/AppData/Local/Temp/Rtmp84HJPx/R.INSTALL7e81a241d97/speEaR/man/makeSetMatrix.Rd:25: unknown macro '\begin'
Warning: C:/Users/yrq12edu/AppData/Local/Temp/Rtmp84HJPx/R.INSTALL7e81a241d97/speEaR/man/makeSetMatrix.Rd:26: unknown macro '\item'
Warning: C:/Users/yrq12edu/AppData/Local/Temp/Rtmp84HJPx/R.INSTALL7e81a241d97/speEaR/man/makeSetMatrix.Rd:30: unknown macro '\end'
*** installing help indices
** building package indices
** testing if installed package can be loaded
*** arch - i386
Warning in library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE) :
  no library trees found in 'lib.loc'
Error: loading failed
Execution halted
*** arch - x64
Warning in library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE) :
  no library trees found in 'lib.loc'
Error: loading failed
Execution halted
ERROR: loading failed for 'i386', 'x64'
* removing '\\ueahome5/ressci17/yrq12edu/data/Documents/R/win-library/2.15/speEaR'
Warning messages:
1: running command 'C:/PROGRA~1/R/R-215~1.2/bin/i386/R CMD INSTALL -l "\\ueahome5/ressci17/yrq12edu/data/Documents/R/win-library/2.15"   "speEaR_1.0.tar.gz"' had status 1 
2: In install.packages("speEaR_1.0.tar.gz", repos = NULL, type = "source") :
  installation of package ‘speEaR_1.0.tar.gz’ had non-zero exit status

Answer 1

几天前我遇到了类似的错误。这是因为你正在安装到这个目录：

 '\\ueahome5/ressci17/yrq12edu/data/Documents/R/win-library/2.15/speEaR'

我猜它连接到网络驱动器。您应该做的是转到该网络驱动器并明确复制地址，例如

 'M:/ressci17/yrq12edu/data/Documents/R/win-library/2.15/'

然后在安装时使用它来指定库位置。例如：

install.packages("speEaR_1.0.tar.gz", repos=NULL, type="source",lib='U:/ressci17/yrq12edu/data/Documents/R/win-library/2.15/')

或者尝试 devtools ，解压你的 tar 包并执行以下操作：

library(devtools)
has_devel() ## check if your Rtools are properly installed
check('speEaR')
##build('speEaR')
install("speEaR",args='-l "U:/ressci17/yrq12edu/data/Documents/R/win-library/2.15/"')

这就是我解决问题的方法。

Answer 2

我发现问题与 R 脚本中 roxygen cmets 中的 Windows 路径反斜杠有关。解决方案是将反斜杠更改为单个正斜杠。 示例：最初我的 roxygen 信息是这样的：

#'  Performs a search in MS Windows file system for all files in the
#'  `C:\USERS\MYNAME` directory, and all directories below that

导致此警告消息：

* installing to library 'C:/Users/MYNAME/Documents/R/win-library/3.2'
* installing *source* package 'whatever' ...
** R
** preparing package for lazy loading
** help
Warning: C:/Users/MYNAME/Documents/R/CODE/whatever/man/func.Rd:11: unknown macro '\USERS'
Warning: C:/Users/MYNAME/Documents/R/CODE/whatever/man/func.Rd:11: unknown macro '\MYNAME'
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (whatever)

线索是文本是橙色的，而不是 RStudio 中通常的蓝色。

因此，将反斜杠更改为正斜杠，不会产生警告消息，并且所有 roxygen 注释现在都是蓝色的。

#'  Performs a search in MS Windows file system for all files in the
#'  `C:/USERS/MYNAME` directory, and all directories below