有不同的方法,具体取决于您的确切设置和所需的输出。
A 版
如果您想拥有一个 LSTM 模型,它可以获取大量数据并预测下一步,这里有一个自包含的示例。
合成数据与您的图中显示的数据仅适度相似,但我希望它仍然有助于说明。
上方面板中的预测显示了所有时间序列块都已知并且每个时间序列块都预测下一步的情况。
下面的面板显示了更现实的情况,其中所讨论的时间序列的开始是已知的,并且它的其余部分是迭代预测的,一次一步。显然,预测误差可能会随着时间的推移而累积和增长。
# import modules
import matplotlib.pyplot as plt
import numpy as np
import pandas as pd
import keras
import keras.models
import keras.layers
import sklearn
import sklearn.metrics
# please load auxiliary functions defined below!
# (omitted here for better readability)
# set seed
np.random.seed(42)
# number of time series
n_samples = 5
# number of steps used for prediction
n_steps = 50
# number of epochs for LSTM training
epochs = 100
# create synthetic data
# (see bottom left panel below, very roughly resembling your data)
tab = create_data(n_samples)
# train model without first column
x_train, y_train = prepare_data(tab.iloc[:, 1:], n_steps=n_steps)
model, history = train_model(x_train, y_train, n_steps=n_steps, epochs=epochs)
# predict first column for testing
# (all chunks are known and only on time step is predicted for each)
veo = tab[0].copy().values
y_test, y_pred = predict_all(veo, model)
# predict iteratively
# (first chunk is known and new values are predicted iteratively)
vec = veo.copy()
y_iter = predict_iterative(vec, n_steps, model)
# plot results
plot_single(y_test, [y_pred, y_iter], n_steps)
版本 B
如果您的时间序列的总长度已知且固定,并且您希望“自动完成”不完整的时间序列(图中的绿色虚线),则同时预测多个值可能更容易、更可靠。
但是,因为对于每个时间序列,您只将起始块作为训练数据(并预测其余部分),这可能需要更完全已知的时间序列。
不过,因为每个时间序列在训练期间只使用一次(而不是分成许多连续的块),所以训练速度更快,结果看起来还不错。
# please load auxiliary functions defined below!
# (omitted here for better readability)
# number of time series
n_samples = 10
# create synthetic data
# (see bottom left panel below, very roughly resembling your data)
tab = create_data(n_samples)
# prepare training data
x_train = tab.iloc[:n_steps, 1:].values.T
x_train = x_train.reshape(*x_train.shape, 1)
y_train = tab.iloc[n_steps:, 1:].values.T
print(x_train.shape) # (9, 50, 1) = old shape, 1D time series
# create additional dummy features to demonstrate usage of nD time series input data
# (feature_i = factor_i * score_i, with sum_i factor_i = 1)
feature_factors = [0.3, 0.2, 0.5]
x_train = np.dstack([x_train] + [factor*x_train for factor in feature_factors])
print(x_train.shape) # (9, 50, 4) = new shape, original 1 + 3 new features
# create LSTM which predicts everything beyond n_steps
n_steps_out = len(tab) - n_steps
model, history = train_model(x_train, y_train, n_steps=n_steps, epochs=epochs,
n_steps_out=n_steps_out)
# prepare test data
x_test = tab.iloc[:n_steps, :1].values.T
x_test = x_test.reshape(*x_test.shape, 1)
x_test = np.dstack([x_test] + [factor*x_test for factor in feature_factors])
y_test = tab.iloc[n_steps:, :1].values.T[0]
y_pred = model.predict(x_test)[0]
# plot results
plot_multi(history, tab, y_pred, n_steps)
更新
您好 Shlomi,感谢您的更新。如果我理解正确,那么您将拥有更多功能,而不是一维时间序列,即 nD 时间序列。实际上,这已经包含在模型中(带有部分未定义的 n_features 变量,现已更正)。我在版本 B 中添加了“创建附加虚拟特征”部分,其中虚拟特征是通过拆分原始一维时间序列创建的(但也保留原始数据,对应于您的 f(...)=score,这听起来像一个工程应该有用的功能)。然后,我只在 LSTM 网络设置函数中添加了n_features = x_train.shape[2]。只需确保您的个人特征在将它们输入网络之前已正确缩放(例如 [0-1])。当然,预测质量很大程度上取决于实际数据。
辅助功能
def create_data(n_samples):
# window width for rolling average
window = 10
# position of change in trend
thres = 200
# time period of interest
dates = pd.date_range(start='2020-02-16', end='2020-03-15', freq='H')
# create data frame
tab = pd.DataFrame(index=dates)
lend = len(tab)
lin = np.arange(lend)
# create synthetic time series
for ids in range(n_samples):
trend = 4 * lin - 3 * (lin-thres) * (lin > thres)
# scale to [0, 1] interval (approximately) for easier handling by network
trend = 0.9 * trend / max(trend)
noise = 0.1 * (0.1 + trend) * np.random.randn(lend)
vec = trend + noise
tab[ids] = vec
# compute rolling average to get smoother variation
tab = tab.rolling(window=window).mean().iloc[window:]
return tab
def split_sequence(vec, n_steps=20):
# split sequence into chunks of given size
x_trues, y_trues = [], []
steps = len(vec) - n_steps
for step in range(steps):
ilo = step
iup = step + n_steps
x_true, y_true = vec[ilo:iup], vec[iup]
x_trues.append(x_true)
y_trues.append(y_true)
x_true = np.array(x_trues)
y_true = np.array(y_trues)
return x_true, y_true
def prepare_data(tab, n_steps=20):
# convert data frame with multiple columns into chucks
x_trues, y_trues = [], []
if tab.ndim == 2:
arr = np.atleast_2d(tab).T
else:
arr = np.atleast_2d(tab)
for col in arr:
x_true, y_true = split_sequence(col, n_steps=n_steps)
x_trues.append(x_true)
y_trues.append(y_true)
x_true = np.vstack(x_trues)
x_true = x_true.reshape(*x_true.shape, 1)
y_true = np.hstack(y_trues)
return x_true, y_true
def train_model(x_train, y_train, n_units=50, n_steps=20, epochs=200,
n_steps_out=1):
# get number of features from input data
n_features = x_train.shape[2]
# setup network
# (feel free to use other combination of layers and parameters here)
model = keras.models.Sequential()
model.add(keras.layers.LSTM(n_units, activation='relu',
return_sequences=True,
input_shape=(n_steps, n_features)))
model.add(keras.layers.LSTM(n_units, activation='relu'))
model.add(keras.layers.Dense(n_steps_out))
model.compile(optimizer='adam', loss='mse', metrics=['mse'])
# train network
history = model.fit(x_train, y_train, epochs=epochs,
validation_split=0.1, verbose=1)
return model, history
def predict_all(vec, model):
# split data
x_test, y_test = prepare_data(vec, n_steps=n_steps)
# use trained model to predict all data points from preceeding chunk
y_pred = model.predict(x_test, verbose=1)
y_pred = np.hstack(y_pred)
return y_test, y_pred
def predict_iterative(vec, n_steps, model):
# use last chunk to predict next value, iterate until end is reached
y_iter = vec.copy()
lent = len(y_iter)
steps = lent - n_steps - 1
for step in range(steps):
print(step, steps)
ilo = step
iup = step + n_steps + 1
x_test, y_test = prepare_data(y_iter[ilo:iup], n_steps=n_steps)
y_pred = model.predict(x_test, verbose=0)
y_iter[iup] = y_pred
return y_iter[n_steps:]
def plot_single(y_test, y_plots, n_steps, nrows=2):
# prepare variables for plotting
metric = 'mse'
mima = [min(y_test), max(y_test)]
titles = ['all', 'iterative']
lin = np.arange(-n_steps, len(y_test))
# create figure
fig, axis = plt.subplots(figsize=(16, 9),
nrows=2, ncols=3)
# plot time series
axia = axis[1, 0]
axia.set_title('original data')
tab.plot(ax=axia)
axia.set_xlabel('time')
axia.set_ylabel('value')
# plot network training history
axia = axis[0, 0]
axia.set_title('training history')
axia.plot(history.history[metric], label='train')
axia.plot(history.history['val_'+metric], label='test')
axia.set_xlabel('epoch')
axia.set_ylabel(metric)
axia.set_yscale('log')
plt.legend()
# plot result for "all" and "iterative" prediction
for idy, y_plot in enumerate(y_plots):
# plot true/predicted time series
axia = axis[idy, 1]
axia.set_title(titles[idy])
axia.plot(lin, veo, label='full')
axia.plot(y_test, label='true')
axia.plot(y_plot, label='predicted')
plt.legend()
axia.set_xlabel('time')
axia.set_ylabel('value')
axia.set_ylim(0, 1)
# plot scatter plot of true/predicted data
axia = axis[idy, 2]
r2 = sklearn.metrics.r2_score(y_test, y_plot)
axia.set_title('R2 = %.2f' % r2)
axia.scatter(y_test, y_plot)
axia.plot(mima, mima, color='black')
axia.set_xlabel('true')
axia.set_ylabel('predicted')
plt.tight_layout()
return None
def plot_multi(history, tab, y_pred, n_steps):
# prepare variables for plotting
metric = 'mse'
# create figure
fig, axis = plt.subplots(figsize=(16, 9),
nrows=1, ncols=2, squeeze=False)
# plot network training history
axia = axis[0, 0]
axia.set_title('training history')
axia.plot(history.history[metric], label='train')
axia.plot(history.history['val_'+metric], label='test')
axia.set_xlabel('epoch')
axia.set_ylabel(metric)
axia.set_yscale('log')
plt.legend()
# plot true/predicted time series
axia = axis[0, 1]
axia.plot(tab[0].values, label='true')
axia.plot(range(n_steps, len(tab)), y_pred, label='predicted')
plt.legend()
axia.set_xlabel('time')
axia.set_ylabel('value')
axia.set_ylim(0, 1)
plt.tight_layout()
return None