【问题标题】:Keras Generator with Tensorflow Dataset API - IndexError: pop from empty list带有 Tensorflow 数据集 API 的 Keras 生成器 - IndexError:从空列表中弹出
【发布时间】:2019-02-17 13:32:51
【问题描述】:

我需要开发一个 RNN 模型,并希望使用数据生成器来为训练/评估循环提供数据。

首先,我在从 csv 文件中获取数据时使用了这个帮助功能。

RECORD_DEFAULTS_TRAIN = [[0], [0.0], [0.0], [0.0], [0.0], [0.0], [0.0]]

def decode_csv(line):
   parsed_line = tf.decode_csv(line, RECORD_DEFAULTS_TRAIN)
   label =  parsed_line[-1]      # label is the last element of the list
   del parsed_line[-1]           # delete the last element from the list
   del parsed_line[0]            # even delete the first element bcz it is assumed NOT to be a feature
   features = tf.stack(parsed_line)  # Stack features so that you can later vectorize forward prop., etc.
   return features, label 

这是我的数据生成器函数:

def data_generator(file_path_list, batch_size):

  filenames = tf.placeholder(tf.string, shape=[None])
  dataset = tf.data.Dataset.from_tensor_slices(filenames)
  dataset = dataset.flat_map(lambda filename: tf.data.TextLineDataset(filename).skip(1).map(decode_csv))
  dataset = dataset.shuffle(buffer_size=1000)
  dataset = dataset.batch(batch_size)
  iterator = dataset.make_initializable_iterator()
  next_element = iterator.get_next()

  with tf.Session() as sess:
      while True:
          sess.run(iterator.initializer, feed_dict={filenames: file_path_list})
          while True:            
              try:
                batch_data, batch_labels = sess.run(next_element)
                # Dimension of the data needs to be: (batch_size, length_of_each_sequence, nr_inputs_in_each_timestep)
                # Since the last batch in a epoch can have a different size,
                # "batch_data.shape[0]" is used instead of batch_size
                batch_data = np.reshape(batch_data, (batch_data.shape[0], SEQUENCE_LEN, 1))
              except tf.errors.OutOfRangeError:
                break
              yield (batch_data, batch_labels)

这是我构建和训练模型的方法:

lstm_model = Sequential()
lstm_model.add(LSTM(5, input_shape=(SEQUENCE_LEN, 1), return_sequences=True))
lstm_model.add(LSTM(5, input_shape=(SEQUENCE_LEN, 1), return_sequences=False))
lstm_model.add(Dense(1))

opt = tf.keras.optimizers.Adam(lr=0.001, decay=0.0009)

lstm_model.compile(loss='mean_absolute_error', optimizer=opt, metrics=['accuracy'])

lstm_model.fit_generator(data_generator(TRAIN_FILE_PATHS, TRAIN_BATCH_SIZE), #generator, 
                         steps_per_epoch=(NR_TRAIN_EXAMPLES // TRAIN_BATCH_SIZE),
                         epochs=NR_EPOCHS, 
                         verbose=1,
                         validation_data=data_generator(DEV_FILE_PATHS, TRAIN_BATCH_SIZE),
                         validation_steps=(NR_DEV_EXAMPLES // DEV_BATCH_SIZE))

这是我在测试集上评估模型的方式:

lstm_model.evaluate_generator(data_generator(TEST_FILE_PATHS, TEST_BATCH_SIZE), 
                             steps=(NR_TEST_EXAMPLES // TEST_BATCH_SIZE), 
                             verbose=1)

在训练和评估之后,我在日志中看到以下错误:

IndexError: pop from empty list

这是训练结束后的最后一部分日志:

Epoch 200/200
2/2 [==============================] - 0s 28ms/step - loss: 0.0091 - acc: 0.0120 - val_loss: 0.0128 - val_acc: 0.0000e+00
Exception ignored in: <generator object data_generator at 0x7fa97d9e34c0>
Traceback (most recent call last):
  File "<ipython-input-7-2ef5e6514df7>", line 33, in data_generator
  File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/client/session.py", line 1530, in __exit__
    self._default_graph_context_manager.__exit__(exec_type, exec_value, exec_tb)
  File "/usr/lib/python3.6/contextlib.py", line 99, in __exit__
    self.gen.throw(type, value, traceback)
  File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/framework/ops.py", line 5025, in get_controller
    context.context().context_switches.pop()
  File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/eager/context.py", line 136, in pop
    self.stack.pop()
IndexError: pop from empty list
Exception ignored in: <generator object data_generator at 0x7fa97d9e3678>
Traceback (most recent call last):
  File "<ipython-input-7-2ef5e6514df7>", line 33, in data_generator
  File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/client/session.py", line 1530, in __exit__
    self._default_graph_context_manager.__exit__(exec_type, exec_value, exec_tb)
  File "/usr/lib/python3.6/contextlib.py", line 99, in __exit__
    self.gen.throw(type, value, traceback)
  File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/framework/ops.py", line 5025, in get_controller
    context.context().context_switches.pop()
  File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/eager/context.py", line 136, in pop
    self.stack.pop()
IndexError: pop from empty list

<tensorflow.python.keras.callbacks.History at 0x7fa97d8b4828>

这是我在运行evaluate_generator() 后看到的:

2/2 [==============================] - 0s 28ms/step

Exception ignored in: <generator object data_generator at 0x7fa97d732af0>
Traceback (most recent call last):
  File "<ipython-input-7-2ef5e6514df7>", line 33, in data_generator
  File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/client/session.py", line 1530, in __exit__
    self._default_graph_context_manager.__exit__(exec_type, exec_value, exec_tb)
  File "/usr/lib/python3.6/contextlib.py", line 99, in __exit__
    self.gen.throw(type, value, traceback)
  File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/framework/ops.py", line 5025, in get_controller
    context.context().context_switches.pop()
  File "/usr/local/lib/python3.6/dist-packages/tensorflow/python/eager/context.py", line 136, in pop
    self.stack.pop()
IndexError: pop from empty list

[0.008863004390150309, 0.0]

我感到困惑的是,为什么在上述每种情况下我都会看到错误消息IndexError: pop from empty list?正常吗?还是我做错了什么?

【问题讨论】:

    标签: python tensorflow keras generator rnn


    【解决方案1】:

    解决了。 我想解释这个问题而不是删除我的帖子,以便它可能也可以帮助其他人..

    我将只给出evaluate_generator(...) 函数的示例。 这就是我调用函数的方式..

    lstm_model.evaluate_generator(data_generator(TEST_FILE_PATHS, TEST_BATCH_SIZE), 
                                 steps=(NR_TEST_EXAMPLES // TEST_BATCH_SIZE), 
                                 verbose=1)
    

    我将其更改如下:

    test_data_generator = data_generator(TEST_FILE_PATHS, TEST_BATCH_SIZE)
    lstm_model.evaluate_generator(test_data_generator, 
                                  steps=(NR_TEST_EXAMPLES // TEST_BATCH_SIZE), 
                                  verbose=1)
    

    问题就解决了。我在不同的地方看到了这两种用法,即使在网上找到的每条信息都不一定是真的。我也不清楚为什么在更改上面的代码时会解决它。如果有人知道,我很乐意听到解释。

    【讨论】:

    • 我觉得这很难相信,但我遇到了同样的问题,解决方案确实是这里建议的。
    • 确实莫名其妙。
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