【问题标题】:Spark History Server very slow when driver running on master node当驱动程序在主节点上运行时,Spark History Server 非常慢
【发布时间】:2020-10-12 17:51:43
【问题描述】:

我正在使用在 AWS EMR 5.30.0 上运行的 Spark 2.4.5 和 r5.4xlarge 实例(16 个 vCore、128 GiB 内存、仅 EBS 存储、EBS 存储:256 GiB):1 个主服务器、1 个内核和 30 个任务.

我在主节点上启动了 Spark Thrift Server,它是集群上唯一运行的作业

sudo /usr/lib/spark/sbin/start-thriftserver.sh --conf spark.blacklist.enabled=true --conf spark.blacklist.stage.maxFailedExecutorsPerNode=4 --conf spark.blacklist.task.maxTaskAttemptsPerNode=3 --conf spark.driver.cores=12 --conf spark.driver.maxResultSize=10g --conf spark.driver.memory=86000M --conf spark.driver.memoryOverhead=10240 --conf spark.kryoserializer.buffer.max=768m --conf spark.rpc.askTimeout=700 --conf spark.sql.broadcastTimeout=800 --conf spark.sql.sources.partitionOverwriteMode=dynamic --conf spark.task.maxFailures=20

然后我使用 JDBC 在其上启动 SQL 查询,但是当运行繁重的查询时,UI 变得非常慢。我想如果我把 spark.driver.cores=12(主节点有 16 个)和 spark.driver.memory=86000M(有 128GB 内存)给主节点留一些余量就可以了能够运行其他进程,如历史服务器,但它仍然很慢。

所以我想我可以编辑其他设置以使 UI 正常工作,但我不确定是什么。

这些是集群中 spark-defaults.conf 的设置,仅供参考:

spark.driver.extraClassPath /usr/lib/hadoop-lzo/lib/*:/usr/lib/hadoop/hadoop-aws.jar:/usr/share/aws/aws-java-sdk/*:/ usr/share/aws/emr/emrfs/conf:/usr/share/aws/emr/emrfs/lib/*:/usr/share/aws/emr/emrfs/auxlib/*:/usr/share/aws/emr /goodies/lib/emr-spark-goodies.jar:/usr/share/aws/emr/security/conf:/usr/share/aws/emr/security/lib/*:/usr/share/aws/hmclient/ lib/aws-glue-datacatalog-spark-client.jar:/usr/share/java/Hive-JSON-Serde/hive-openx-serde.jar:/usr/share/aws/sagemaker-spark-sdk/lib/ sagemaker-spark-sdk.jar:/usr/share/aws/emr/s3select/lib/emr-s3-select-spark-connector.jar
spark.driver.extraLibraryPath /usr/lib/hadoop/lib/native:/usr/lib/hadoop-lzo/lib/native
spark.executor.extraClassPath /usr/lib/hadoop-lzo/lib/*:/usr/lib/hadoop/hadoop-aws.jar:/usr/share/aws/aws-java-sdk/*:/usr/share /aws/emr/emrfs/conf:/usr/share/aws/emr/emrfs/lib/*:/usr/share/aws/emr/emrfs/auxlib/*:/usr/share/aws/emr/goodies/ lib/emr-spark-goodies.jar:/usr/share/aws/emr/security/conf:/usr/share/aws/emr/security/lib/*:/usr/share/aws/hmclient/lib/aws -glue-datacatalog-spark-client.jar:/usr/share/java/Hive-JSON-Serde/hive-openx-serde.jar:/usr/share/aws/sagemaker-spark-sdk/lib/sagemaker-spark -sdk.jar:/usr/share/aws/emr/s3select/lib/emr-s3-select-spark-connector.jar
spark.executor.extraLibraryPath /usr/lib/hadoop/lib/native:/usr/lib/hadoop-lzo/lib/native
spark.eventLog.enabled 真
spark.eventLog.dir hdfs:///var/log/spark/apps
spark.history.fs.logDirectory hdfs:///var/log/spark/apps
spark.sql.warehouse.dir hdfs:///user/spark/warehouse
spark.sql.hive.metastore.sharedPrefixes com.amazonaws.services.dynamodbv2
spark.yarn.historyServer.address :18080
spark.history.ui.port 18080
spark.shuffle.service.enabled true
spark.yarn.dist.files /etc/spark/conf/hive-site.xml
spark.driver.extraJavaOptions -XX:+UseConcMarkSweepGC -XX:CMSInitiatingOccupancyFraction=70 -XX:MaxHeapFreeRatio=70 -XX:+CMSClassUnloadingEnabled -XX:OnOutOfMemoryError='kill -9 %p'
spark.dynamicAllocation.enabled 真
spark.blacklist.decommissioning.enabled true
spark.blacklist.decommissioning.timeout 1h
spark.resourceManager.cleanupExpiredHost true
spark.stage.attempt.ignoreOnDecommissionFetchFailure true
spark.decommissioning.timeout.threshold 20
spark.executor.extraJavaOptions -verbose:gc -XX:+PrintGCDetails -XX:+PrintGCDateStamps -XX:+UseConcMarkSweepGC -XX:CMSInitiatingOccupancyFraction=70 -XX:MaxHeapFreeRatio=70 -XX:+CMSClassUnloadingEnabled -XX:OnOutOfMemoryError='kill -9 %p'
spark.hadoop.yarn.timeline-service.enabled false
spark.yarn.appMasterEnv.SPARK_PUBLIC_DNS $(hostname -f)
spark.files.fetchFailure.unRegisterOutputOnHost true
spark.hadoop.mapreduce.fileoutputcommitter.algorithm.version.emr_internal_use_only.EmrFileSystem 2
spark.hadoop.mapreduce.fileoutputcommitter.cleanup-failures.ignored.emr_internal_use_only.EmrFileSystem true
spark.hadoop.fs.s3.getObject.initialSocketTimeoutMilliseconds 2000
spark.sql.parquet.output.committer.class com.amazon.emr.committer.EmrOptimizedSparkSqlParquetOutputCommitter
spark.sql.parquet.fs.optimized.committer.optimization-enabled true
spark.sql.emr.internal.extensions com.amazonaws.emr.spark.EmrSparkSessionExtensions
spark.sql.sources.partitionOverwriteMode 动态
spark.executor.instances 1
spark.executor.cores 16
spark.driver.memory 2048M
spark.executor.memory 109498M
spark.default.parallelism 32
spark.emr.maximizeResourceAllocation true```

【问题讨论】:

    标签: amazon-web-services apache-spark amazon-emr


    【解决方案1】:

    问题在于只有 1 个核心实例,因为日志保存在 HDFS 中,因此该实例成为瓶颈。 我添加了另一个核心实例,现在情况好多了。

    另一种解决方案可能是将日志保存到 S3/S3A 而不是 HDFS,更改 spark-defaults.conf 中的这些参数(确保它们也在 UI 配置中更改)但它可能需要添加一些 JAR 文件才能工作.

    spark.eventLog.dir               hdfs:///var/log/spark/apps
    spark.history.fs.logDirectory    hdfs:///var/log/spark/apps
    

    【讨论】:

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