【问题标题】:How to run spark 3.2.0 on google dataproc?如何在 google dataproc 上运行 spark 3.2.0?
【发布时间】:2022-10-03 04:00:39
【问题描述】:

目前,google dataproc 没有 spark 3.2.0 作为图像。可用的最新版本是 3.1.2。我想在 pyspark 功能上使用 spark 随 3.2.0 发布的 pandas。

我正在执行以下步骤来使用 spark 3.2.0

  1. 在本地创建了一个环境“pyspark”,其中包含 pyspark 3.2.0
  2. conda env export > environment.yaml导出环境yaml
  3. 使用此 environment.yaml 创建了一个 dataproc 集群。集群被正确创建,环境在主服务器和所有工作人员上可用
  4. 然后我更改环境变量。 export SPARK_HOME=/opt/conda/miniconda3/envs/pyspark/lib/python3.9/site-packages/pyspark(指向 pyspark 3.2.0)、export SPARK_CONF_DIR=/usr/lib/spark/conf(使用 dataproc\ 的配置文件)和 export PYSPARK_PYTHON=/opt/conda/miniconda3/envs/pyspark/bin/python(使环境包可用)

    现在,如果我尝试运行 pyspark shell,我会得到:

    21/12/07 01:25:16 ERROR org.apache.spark.scheduler.AsyncEventQueue: Listener AppStatusListener threw an exception
    java.lang.NumberFormatException: For input string: \"null\"
            at java.lang.NumberFormatException.forInputString(NumberFormatException.java:65)
            at java.lang.Integer.parseInt(Integer.java:580)
            at java.lang.Integer.parseInt(Integer.java:615)
            at scala.collection.immutable.StringLike.toInt(StringLike.scala:304)
            at scala.collection.immutable.StringLike.toInt$(StringLike.scala:304)
            at scala.collection.immutable.StringOps.toInt(StringOps.scala:33)
            at org.apache.spark.util.Utils$.parseHostPort(Utils.scala:1126)
            at org.apache.spark.status.ProcessSummaryWrapper.<init>(storeTypes.scala:527)
            at org.apache.spark.status.LiveMiscellaneousProcess.doUpdate(LiveEntity.scala:924)
            at org.apache.spark.status.LiveEntity.write(LiveEntity.scala:50)
            at org.apache.spark.status.AppStatusListener.update(AppStatusListener.scala:1213)
            at org.apache.spark.status.AppStatusListener.onMiscellaneousProcessAdded(AppStatusListener.scala:1427)
            at org.apache.spark.status.AppStatusListener.onOtherEvent(AppStatusListener.scala:113)
            at org.apache.spark.scheduler.SparkListenerBus.doPostEvent(SparkListenerBus.scala:100)
            at org.apache.spark.scheduler.SparkListenerBus.doPostEvent$(SparkListenerBus.scala:28)
            at org.apache.spark.scheduler.AsyncEventQueue.doPostEvent(AsyncEventQueue.scala:37)
            at org.apache.spark.scheduler.AsyncEventQueue.doPostEvent(AsyncEventQueue.scala:37)
            at org.apache.spark.util.ListenerBus.postToAll(ListenerBus.scala:117)
            at org.apache.spark.util.ListenerBus.postToAll$(ListenerBus.scala:101)
            at org.apache.spark.scheduler.AsyncEventQueue.super$postToAll(AsyncEventQueue.scala:105)
            at org.apache.spark.scheduler.AsyncEventQueue.$anonfun$dispatch$1(AsyncEventQueue.scala:105)
            at scala.runtime.java8.JFunction0$mcJ$sp.apply(JFunction0$mcJ$sp.java:23)
            at scala.util.DynamicVariable.withValue(DynamicVariable.scala:62)
            at org.apache.spark.scheduler.AsyncEventQueue.org$apache$spark$scheduler$AsyncEventQueue$$dispatch(AsyncEventQueue.scala:100)
            at org.apache.spark.scheduler.AsyncEventQueue$$anon$2.$anonfun$run$1(AsyncEventQueue.scala:96)
            at org.apache.spark.util.Utils$.tryOrStopSparkContext(Utils.scala:1404)
            at org.apache.spark.scheduler.AsyncEventQueue$$anon$2.run(AsyncEventQueue.scala:96)
    

    但是,即使在此之后,shell 也会启动。但是,它不执行代码。抛出异常: 我尝试运行: set(sc.parallelize(range(10),10).map(lambda x: socket.gethostname()).collect()) 但是,我得到:

    21/12/07 01:32:15 WARN org.apache.spark.deploy.yarn.YarnAllocator: Container from a bad node: container_1638782400702_0003_01_000001 on host: monsoon-test1-w-2.us-central1-c.c.monsoon-credittech.internal. Exit status: 1. Diagnostics: [2021-12-07 
    01:32:13.672]Exception from container-launch.
    Container id: container_1638782400702_0003_01_000001
    Exit code: 1
    [2021-12-07 01:32:13.717]Container exited with a non-zero exit code 1. Error file: prelaunch.err.
    Last 4096 bytes of prelaunch.err :
    Last 4096 bytes of stderr :
    ltChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:919)
            at io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:163)
            at io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:714)
            at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:650)
            at io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:576)
            at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:493)
            at io.netty.util.concurrent.SingleThreadEventExecutor$4.run(SingleThreadEventExecutor.java:989)
            at io.netty.util.internal.ThreadExecutorMap$2.run(ThreadExecutorMap.java:74)
            at io.netty.util.concurrent.FastThreadLocalRunnable.run(FastThreadLocalRunnable.java:30)
            at java.lang.Thread.run(Thread.java:748)
    21/12/07 01:31:43 ERROR org.apache.spark.executor.YarnCoarseGrainedExecutorBackend: Executor self-exiting due to : Driver monsoon-test1-m.us-central1-c.c.monsoon-credittech.internal:44367 disassociated! Shutting down.
    21/12/07 01:32:13 WARN org.apache.hadoop.util.ShutdownHookManager: ShutdownHook \'$anon$2\' timeout, java.util.concurrent.TimeoutException
    java.util.concurrent.TimeoutException
            at java.util.concurrent.FutureTask.get(FutureTask.java:205)
            at org.apache.hadoop.util.ShutdownHookManager.executeShutdown(ShutdownHookManager.java:124)
            at org.apache.hadoop.util.ShutdownHookManager$1.run(ShutdownHookManager.java:95)
    21/12/07 01:32:13 ERROR org.apache.spark.util.Utils: Uncaught exception in thread shutdown-hook-0
    java.lang.InterruptedException
            at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.reportInterruptAfterWait(AbstractQueuedSynchronizer.java:2014)
            at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.awaitNanos(AbstractQueuedSynchronizer.java:2088)
            at java.util.concurrent.ThreadPoolExecutor.awaitTermination(ThreadPoolExecutor.java:1475)
            at java.util.concurrent.Executors$DelegatedExecutorService.awaitTermination(Executors.java:675)
            at org.apache.spark.rpc.netty.MessageLoop.stop(MessageLoop.scala:60)
            at org.apache.spark.rpc.netty.Dispatcher.$anonfun$stop$1(Dispatcher.scala:197)
            at org.apache.spark.rpc.netty.Dispatcher.$anonfun$stop$1$adapted(Dispatcher.scala:194)
            at scala.collection.Iterator.foreach(Iterator.scala:943)
            at scala.collection.Iterator.foreach$(Iterator.scala:943)
            at scala.collection.AbstractIterator.foreach(Iterator.scala:1431)
            at scala.collection.IterableLike.foreach(IterableLike.scala:74)
            at scala.collection.IterableLike.foreach$(IterableLike.scala:73)
            at scala.collection.AbstractIterable.foreach(Iterable.scala:56)
            at org.apache.spark.rpc.netty.Dispatcher.stop(Dispatcher.scala:194)
            at org.apache.spark.rpc.netty.NettyRpcEnv.cleanup(NettyRpcEnv.scala:331)
            at org.apache.spark.rpc.netty.NettyRpcEnv.shutdown(NettyRpcEnv.scala:309)
            at org.apache.spark.SparkEnv.stop(SparkEnv.scala:96)
            at org.apache.spark.executor.Executor.stop(Executor.scala:335)
            at org.apache.spark.executor.Executor.$anonfun$new$2(Executor.scala:76)
            at org.apache.spark.util.SparkShutdownHook.run(ShutdownHookManager.scala:214)
            at org.apache.spark.util.SparkShutdownHookManager.$anonfun$runAll$2(ShutdownHookManager.scala:188)
            at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:23)
            at org.apache.spark.util.Utils$.logUncaughtExceptions(Utils.scala:1996)
            at org.apache.spark.util.SparkShutdownHookManager.$anonfun$runAll$1(ShutdownHookManager.scala:188)
            at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:23)
            at scala.util.Try$.apply(Try.scala:213)
            at org.apache.spark.util.SparkShutdownHookManager.runAll(ShutdownHookManager.scala:188)
            at org.apache.spark.util.SparkShutdownHookManager$$anon$2.run(ShutdownHookManager.scala:178)
            at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
            at java.util.concurrent.FutureTask.run(FutureTask.java:266)
            at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
            at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
            at java.lang.Thread.run(Thread.java:748)
    

    并且相同的错误在停止之前重复多次。

    我在做什么错,如何在 google dataproc 上使用 python 3.2.0?

    标签: apache-spark pyspark google-cloud-dataproc


    【解决方案1】:

    可以通过以下方式实现:

    1. 使用包含 pyspark 3.2 作为包的环境 (your_sample_env) 创建一个 dataproc 集群
    2. 通过添加修改/usr/lib/spark/conf/spark-env.sh
      SPARK_HOME="/opt/conda/miniconda3/envs/your_sample_env/lib/python/site-packages/pyspark"
      SPARK_CONF="/usr/lib/spark/conf"
      

      最后

      1. 修改/usr/lib/spark/conf/spark-defaults.conf,注释掉以下配置
      spark.yarn.jars=local:/usr/lib/spark/jars/*
      spark.yarn.unmanagedAM.enabled=true
      
      

      现在,您的 spark 作业将使用 pyspark 3.2

    【讨论】:

    • 有没有办法在现有的 dataproc 集群上执行此操作? IE。在顶部安装一个新的 pyspark 安装并以某种方式引用它
    【解决方案2】:

    Dataproc Serverless for Spark 刚刚发布,支持 Spark 3.2.0:https://cloud.google.com/dataproc-serverless

    【讨论】:

      【解决方案3】:

      @milominderbinder 的答案在笔记本中对我不起作用。我使用了谷歌给出的pip install script,并在 main.js 中添加了以下代码。

      function main() {
        install_pip
        pip install pyspark==3.2.0
        sed -i '4d;27d' /usr/lib/spark/conf/spark-defaults.conf
        cat << EOF | tee -a /etc/profile.d/custom_env.sh /etc/*bashrc >/dev/null
      export SPARK_HOME=/opt/conda/miniconda3/lib/python3.8/site-packages/pyspark/
      export SPARK_CONF=/usr/lib/spark/conf
      EOF
        sed -i 's/\/usr\/lib\/spark/\/opt\/conda\/miniconda3\/lib\/python3.8\/site-packages\/pyspark\//g' /opt/conda/miniconda3/share/jupyter/kernels/python3/kernel.json
      
        if [[ -z "${PACKAGES}" ]]; then
          echo "WARNING: requirements empty"
          exit 0
        fi
        run_with_retry pip install --upgrade ${PACKAGES}
      
      }

      这使得它可以在带有 Python3 内核的 jupyterlab 中工作。

      【讨论】:

        【解决方案4】:

        快速而肮脏的脚本,在 Dataproc 映像 2.0 的初始化操作中完成:

        #!/usr/bin/env bash
        
        spark_version="3.3.0"
        
        cd /opt
        
        if [[ ! -L /opt/spark ]]; then
            archive_filename="spark-${spark_version}-bin-without-hadoop.tgz"
            rm -rf spark*
            wget "https://dlcdn.apache.org/spark/spark-${spark_version}/${archive_filename}"
            tar xvfz "${archive_filename}"
            rm -f spark*.tgz*
            ln -s spark-* spark
        fi
        
        # This will cause spark to fallback to defaults. There's probably a better way.
        sed -i '/^spark\.yarn\.jars/d' /usr/lib/spark/conf/spark-defaults.conf
        
        # By default, Dataproc uses Hive. For unknown reasons, this doesn't work, so we replace it with 'in-memory'.
        sed -i '/^spark\.sql\.catalogImplementation/d' /usr/lib/spark/conf/spark-defaults.conf
        echo "spark.sql.catalogImplementation=in-memory" >>/usr/lib/spark/conf/spark-defaults.conf
        
        {
            # shellcheck disable=SC2016
            echo 'export PATH=/opt/spark/bin:$PATH'
            echo "export SPARK_CONF_DIR=/usr/lib/spark/conf"
            echo "export SPARK_HOME=/opt/spark"
            # shellcheck disable=SC2016
            echo 'export PYTHONPATH=$(ZIPS=("$SPARK_HOME"/python/lib/*.zip); IFS=:; echo "${ZIPS[*]}"):$PYTHONPATH'
            # shellcheck disable=SC2016
            echo 'export SPARK_DIST_CLASSPATH=$(hadoop classpath)'
        } >/etc/profile.d/zzzzzzzzzzzzz-custom-spark.sh
        chmod +x /etc/profile.d/zzzzzzzzzzzzz-custom-spark.sh
        
        
        

        【讨论】:

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